Workflows & integrations

How Infomap fits into the wider ecosystem and how to run it on real workloads. For which method to choose in the first place, see Reading Infomap through Louvain and Leiden.

• Scanpy and AnnData: cluster single-cell neighbour graphs with infomap.tl.infomap, the Leiden-style entry point for the scanpy workflow.

• GraphRAG tables: run Infomap on the entity and relationship tables a GraphRAG pipeline produces, and get community tables back.

• Running at scale (HPC): scheduler-aware threading, trial sharding across cluster jobs, and merging the results.